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2008

15-Hydroxyprostaglandin dehydrogenase is a target of hepatocyte nuclear factor 3beta and a tumor suppressor in lung cancer, Huang, G.; Eisenberg, R.; Yan, M.; Monti, S.; Lawrence, E.; Fu, P.; Walbroehl, J.; L, , Cancer Research, 2008/07/01/, Volume 68, Issue 13, p.5040 - 8, (2008) Abstract
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SYK-dependent tonic B-cell receptor signaling is a rational treatment target in diffuse large B-cell lymphoma, Chen, L.; Monti, S.; Juszczynski, P.; Daley, J.; Chen, W.; Witzig, T.E.; Habermann, T.M.; Kutok, J.L.; Shipp, M.A. , Blood, 2008/02/15/, Volume 111, Issue 4, p.2230 - 7, (2008) Abstract
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Integrative analysis reveals 53BP1 copy loss and decreased expression in a subset of human diffuse large B-cell lymphomas, Takeyama, K.; Monti, S.; Manis, J.P.; Cin, P.D.; Getz, G.; Beroukhim, R.; Dutt, S.; Aster, J.C.; Alt, F.W.; Golub, T.R.; Shipp, M.A. , Oncogene, 2008/01/10/, Volume 27, Issue 3, p.318 - 22, (2008) Abstract
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Boosting permutation tests for marker selection, Gad Getz, J.G. , (2008) Abstract
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2007

Lesional gene expression profiling in cutaneous T-cell lymphoma reveals natural clusters associated with disease outcome, Shin, J.; Monti, S.; Aires, D.J.; Duvic, M.; Golub, T.; Jones, D.A.; Kupper, T.S. , Blood, 2007/10/15/, Volume 110, Issue 8, p.3015 - 27, (2007) Abstract
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The AP1-dependent secretion of galectin-1 by Reed Sternberg cells fosters immune privilege in classical Hodgkin lymphoma, Juszczynski, P.; Ouyang, J.; Monti, S.; Rodig, S.J.; Takeyama, K.; Abramson, J.; Chen, W.; Kutok, J.L.; Rabinovich, G.A.; Shipp, M.A. , Proceedings of the National Academy of Sciences of the United States of America, 2007/08/07/, Volume 104, Issue 32, p.13134 - 9, (2007) Abstract
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Transcriptional signature with differential expression of BCL6 target genes accurately identifies BCL6-dependent diffuse large B cell lymphomas, Polo, J.M.; Juszczynski, P.; Monti, S.; Cerchietti, L.; Ye, K.; Greally, J.M.; Shipp, M.; Melnick, A. , Proceedings of the National Academy of Sciences of the United States of America, 2007/02/27/, Volume 104, Issue 9, p.3207 - 12, (2007) Abstract
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2006

Transcriptional profiling identifies cyclin D1 as a critical downstream effector of mutant epidermal growth factor receptor signaling, Kobayashi, S.; Shimamura, T.; Monti, S.; Steidl, U.; Hetherington, C.J.; Lowell, A.M.; Golub, T.; Meyerson, M.; Tenen, D.G.; Shapiro, G. I; Halmos, B. , Cancer Research, 2006/12/01/, Volume 66, Issue 23, p.11389 - 98, (2006) Abstract
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Gene expression profiling reveals reproducible human lung adenocarcinoma subtypes in multiple independent patient cohorts, Hayes, D.N.; Monti, S.; Parmigiani, G.; Gilks, C.B.; Naoki, K.; Bhattacharjee, A.; Socinski, M.A.; Perou, C.; Meyerson, M. , Journal of Clinical Oncology: Official Journal of the American Society of Clinical Oncology, 2006/11/01/, Volume 24, Issue 31, p.5079 - 90, (2006) Abstract
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Comparative gene marker selection suite, Gould, J.; Getz, G.; Monti, S.; Reich, M.; Mesirov, J.P. , Bioinformatics (Oxford, England), 2006/08/01/, Volume 22, Issue 15, p.1924 - 5, (2006) Abstract
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2005

NFkappaB activity, function, and target-gene signatures in primary mediastinal large B-cell lymphoma and diffuse large B-cell lymphoma subtypes, Feuerhake, F.; Kutok, J.L.; Monti, S.; Chen, W.; LaCasce, A.S.; Cattoretti, G.; Kurtin, P.; Pinkus, G.S.; de Leval, L.; Harris, N.L.; Savage, K.J.; Neuberg, D.; Habermann, T.M.; Dalla-Favera, R.; Golub, T.R.; A, , Blood, 2005/08/15/, Volume 106, Issue 4, p.1392 - 9, (2005) Abstract
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Molecular profiling of diffuse large B-cell lymphoma identifies robust subtypes including one characterized by host inflammatory response, Monti, S.; Savage, K.J.; Kutok, J.L.; Feuerhake, F.; Kurtin, P.; Mihm, M.; Wu, B.; Pasqualucci, L.; Neuberg, D.; Aguiar, R.C.T.; Dal Cin, P.; Ladd, C.; Pinkus, G.S.; Salles, G.; Harris, N.L.; Dalla-Fave, , Blood, 2005/03/01/, Volume 105, Issue 5, p.1851 - 61, (2005) Abstract
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2003

The molecular signature of mediastinal large B-cell lymphoma differs from that of other diffuse large B-cell lymphomas and shares features with classical Hodgkin lymphoma, Savage, K.J.; Monti, S.; Kutok, J.L.; Cattoretti, G.; Neuberg, D.; De Leval, L.; Kurtin, P.; Dal Cin, P.; Ladd, C.; Feuerhake, F.; Aguiar, R.C.T.; Li, S.; Salles, G.; Berger, F.; Jing, W.; Pinkus, G. , Blood, 2003/12/01/, Volume 102, Issue 12, p.3871 - 9, (2003) Abstract
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2002

Identification of endoglin as a functional marker that defines long-term repopulating hematopoietic stem cells, Chen, C.; Li, M.; de Graaf, D.; Monti, S.; G, , Proceedings of the National Academy of Sciences of the United States of America, 2002/11/26/, Volume 99, Issue 24, p.15468 - 73, (2002) Abstract
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Molecular Determinants of Lymph Node Metastasis in Breast Cancer, Xuegong Zhang, C.G.; Richardson, A.L. , 05/01/2002, (2002) Abstract
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Supplemental Materials
Files Paper Figures Supplement Classics Res File Classics Class File NonClassics Res File NonClassics Class File CEL Files Files Manuscript (PDF) Supplementary Information document (MS Word) Figures (MS Power Point) Datasets and clinical table (ZIP, 13 Mbytes) Sample list Raw data 1/4 (57 MB) Raw data 2/4 (57 MB) (57 MB) Raw data 3/4 (58 MB) (57 MB) Raw data 4/4 (58 MB) Dataset C (gene expression) RES file format Dataset C (class labels) CLS file format Dataset C (clinical table) ASCII file format Files Supplementary Appendix 1 Supplementary Figure A4-1 Supplementary Figure A6-1 Supplementary Figure A6-2 Supplementary Figure A2-1 Supplementary Table 1 Supplementary Table 2 Supplementary Table 3a Supplementary Table 3b Files Supplementary Information URLs Medical News Today URLs Blood Highlight Files Manuscript Figures References Raw data (mean scaled, see supplement) Raw data (unscaled) Sample annotation 2118 genes (Top 5% by F statistic) 4246 genes (Top 10% by F statistic) ASH meeting presentation (slides) ASH meeting presentation (handouts) UNIGENE and GenBank annotation of Affymetrix UNIGENE and GenBank annotation of Lymphochip Lymphochip 2 Affymetrix mapping Consensus Clusters' Markers URLs PNAS Supplemental Information Files PGC-1-alpha timecourse (scaled expression data) Mouse promoters Mouse:human masked promoters Gene list for Figure 1 correlogram Files Technical Report Leukemia data Leukemia class template Novartis multi-tissue data Novartis multi-tissue class template St. Jude Leukemia data St. Jude Leukemia class template Lung cancer data Lung cancer class template CNS tumors data CNS tumors class template Normal tissues data Normal tissues class template Uniform1 Gaussian1 Gaussian3 Gaussian3 class template Gaussian4 Gaussian4 class template Gaussian5.delta2 Gaussian5.delta3 Gaussian5 class template Simulated6 Simulated6 class template URLs Same datasets as this paper Files Paper (Word document) URLs Multi-tumor Cancer Map Paper Lung Paper Breast Paper Prostate Paper Medulloblastoma Paper Lymphoma Paper Files Manuscript Supplement Supplemental Information Dataset A - Global Cancer Map Tumor vs. Met. Dataset B - Lung Outcome Dataset C - Rosetta Breast Outcome Dataset D - Prostate Outcome Dataset E - Medulloblastoma Outcome Dataset F - LBC Lymphoma Outcome Table of Contents

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